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Gene Expression Definition freeware
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Gene Expression Definition

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Added: May 09, 2010 | Visits: 726

Bio::SAGE::Comparison Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...



Platforms: *nix

License: Freeware Size: 8.19 KB Download (86): Bio::SAGE::Comparison Download

Added: June 16, 2010 | Visits: 710

Bio::SAGE::DataProcessing Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...





Platforms: *nix

License: Freeware Size: 19.46 KB Download (76): Bio::SAGE::DataProcessing Download

Released: August 04, 2012  |  Added: August 04, 2012 | Visits: 315

Venn Mapper The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of...


Platforms: Windows

License: Freeware Download (47): Venn Mapper Download

Added: June 28, 2013 | Visits: 246

Gene Expression Colormap a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): Gene Expression Colormap Download

Released: August 25, 2012  |  Added: August 25, 2012 | Visits: 299

MeV 4.6.2 MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Windows

License: Freeware Size: 64.1 MB Download (50): MeV 4.6.2 Download

Released: November 19, 2012  |  Added: November 19, 2012 | Visits: 277

MeV for Mac OS X 4.6.2 MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Mac

License: Freeware Size: 20.6 MB Download (60): MeV for Mac OS X 4.6.2 Download

Added: August 31, 2013 | Visits: 217

SysGenSIM SysGenSIM is a bioinformatics toolbox to create artificial gene expression datasets by simulating Systems Genetics experiments.


Platforms: *nix

License: Freeware Size: 225.28 KB Download (29): SysGenSIM Download

Added: October 12, 2013 | Visits: 222

EMOGEE Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and...


Platforms: Mac

License: Freeware Size: 829.44 KB Download (17): EMOGEE Download

Added: September 18, 2013 | Visits: 185

NetAtlas NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.


Platforms: Mac

License: Freeware Size: 1003.52 KB Download (18): NetAtlas Download

Released: August 08, 2012  |  Added: August 08, 2012 | Visits: 352

CLC Main Workbench Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

License: Freeware Download (47): CLC Main Workbench Download

Released: December 08, 2012  |  Added: December 08, 2012 | Visits: 174

Amiba The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome.


Platforms: Windows, Mac, Linux

License: Freeware Size: 2.05 MB Download (27): Amiba Download

Released: September 09, 2012  |  Added: September 09, 2012 | Visits: 184

EPTable EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles.


Platforms: Mac, BSD, Linux

License: Freeware Size: 20.04 KB Download (27): EPTable Download

Released: December 22, 2012  |  Added: December 22, 2012 | Visits: 150

Genevar Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.


Platforms: Windows, Mac, Linux

License: Freeware Size: 345.41 KB Download (29): Genevar Download

Released: December 21, 2012  |  Added: December 21, 2012 | Visits: 312

Maple Tree Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.


Platforms: Windows, Mac, Linux

License: Freeware Size: 1.17 MB Download (28): Maple Tree Download

Released: August 19, 2012  |  Added: August 19, 2012 | Visits: 190

mged Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)


Platforms: Windows, Mac, Linux

License: Freeware Size: 761.86 KB Download (27): mged Download

Released: September 27, 2012  |  Added: September 27, 2012 | Visits: 184

RmiR RmiR is an R package for the analysis of microRNA and gene expression microarrays.The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...


Platforms: Windows, Mac, Linux

License: Freeware Size: 285.6 KB Download (27): RmiR Download

Added: April 25, 2013 | Visits: 206

DNA MicroArray Image Processing Case Study In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...


Platforms: Matlab

License: Freeware Size: 4.35 MB Download (18): DNA MicroArray Image Processing Case Study Download

Added: November 25, 2013 | Visits: 177

NetAtlas For Linux NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.


Platforms: *nix

License: Freeware Size: 1003.52 KB Download (18): NetAtlas For Linux Download

Added: July 09, 2013 | Visits: 201

ErmineJ ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

License: Freeware Size: 21.13 MB Download (16): ErmineJ Download

Added: July 14, 2013 | Visits: 228

Web Deployment Using MATLAB MATLAB Builder for COM enables you to deploy MATLAB algorithms as COM objects, which can be used on any web server on a Microsoft operating system. The MATLAB based COM object will handle your technical computing, while integrating with a front-end web application built using industry-standard...


Platforms: Matlab

License: Freeware Size: 2.3 MB Download (18): Web Deployment Using MATLAB Download

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